Genetics and medicine

The token  indicates that the package is available at CILEA.

Autodock	AutoDock is a suite of automated docking tools. Autodock It's available at CILEA Exadron AMD Opteron Cluster - Exadron AMD Opteron Cluster for LITBIO users - Exadron Intel Xeon Cluster with version 3.0.5.
BLASTcl3	Blastcl3 is blast client software from NCBI. This program runs on your local machine and uses the BLAST server at NCBI to perform blast searches of the NCBI sequence databases. It's available at CILEA Exadron AMD Opteron Cluster - Exadron AMD Opteron Cluster for LITBIO users
BLAT	BLAT (BLAST-like Alignment Tool) is a DNA/Protein Sequence Analysis program written by Jim Kent. It can find sequences of 95% and greater similarity. BLAT It's available at CILEA Exadron AMD Opteron Cluster - Exadron AMD Opteron Cluster for LITBIO users with version 32x1
CHARMM	CHARMM (Chemistry at HARvard Macromolecular Mechanics) is a program for macromolecular simulations, including energy minimization, molecular dynamics and Monte Carlo simulations CHARMM It's available at CILEA Exadron AMD Opteron Cluster - Exadron AMD Opteron Cluster for LITBIO users with version 1.1
EMBOSS	EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology user community. EMBOSS It's available at CILEA Exadron AMD Opteron Cluster - Exadron AMD Opteron Cluster for LITBIO users with version 3.0.0
Genehunter	Genehunter performs multipoint analysis of pedigree data. Genehunter It's available at CILEA Exadron AMD Opteron Cluster - Exadron AMD Opteron Cluster for LITBIO users with version 2.0
Linkage	Maximum likelihood estimation of recombination rates, calculation of lod score tables, and analysis of genetic risks. Linkage It's available at CILEA Exadron AMD Opteron Cluster - Exadron AMD Opteron Cluster for LITBIO users with version 5.2
MERLIN	MERLIN uses sparse trees to represent gene flow in pedigrees. MERLIN It's available at CILEA Exadron AMD Opteron Cluster - Exadron AMD Opteron Cluster for LITBIO users
MrBayes	MrBayes is a program for the Bayesian estimation of phylogeny. MrBayes It's available at CILEA Exadron AMD Opteron Cluster - Exadron AMD Opteron Cluster for LITBIO users with the version 3.1.2
PHYLIP	PHYLIP, the Phylogeny Inference Package, is a suite of 35 programs for inferring phylogenies (evolutionary trees). PHYLIP It's available at CILEA Exadron AMD Opteron Cluster - Exadron AMD Opteron Cluster for LITBIO users with version 3.66
Ruby	A dynamic, open source programming language with a focus on simplicity and productivity. Ruby It's available at CILEA Exadron AMD Opteron Cluster - Exadron AMD Opteron Cluster for LITBIO users with version 1.8.5
STADEN	STADEN is a package of several programs for DNA sequence assembly which gathers all the steps of sequence pre-processing, assembly, editing and finishing. STADEN It's available at CILEA Exadron AMD Opteron Cluster - Exadron AMD Opteron Cluster for LITBIO users with the version 1.7.0
TRANSMIT	TRANSMIT performs tests for association between genetic marker and disease. TRANSMIT It's available at CILEA Exadron AMD Opteron Cluster - Exadron AMD Opteron Cluster for LITBIO users with the version 2.5
TREE-PUZZLE	TREE-PUZZLE is a computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood. TREE-PUZZLE It's available at CILEA Exadron AMD Opteron Cluster - Exadron AMD Opteron Cluster for LITBIO users with version 5.2
UNPHASED	UNPHASED performs association and TDT for haplotypes. UNPHASED It's available at CILEA Exadron AMD Opteron Cluster - Exadron AMD Opteron Cluster for LITBIO users with version 3.0
Vienna RNA	The Vienna RNA Package is made of several programs to predict and compare RNA secondary structures. Vienna RNA It's available at CILEA Exadron AMD Opteron Cluster - Exadron AMD Opteron Cluster for LITBIO users with the version 1.6.1

Edited by: Paolo Ramieri
Modified: 2009-09-22 10:47:26